PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G275600.3
Common NameB456_008G275600, LOC105765523
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 677aa    MW: 75385 Da    PI: 7.8611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G275600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-056384223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        kC +C++ F ++ n++rHir+H
  Gorai.008G275600.3 63 KCDKCSREFCSPINYRRHIRVH 84
                        7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00986284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1186289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806485IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MKSEDLNDSL DTFIRQAIGK EPFLPFSRTG DSPVQWIQLL HALDQQDIPG WPLLSPLKVQ  60
AQKCDKCSRE FCSPINYRRH IRVHHRLKKL DKDSAKNRDL LAAFWDKLSE DEAKEVVSFK  120
DVLLEGVPGS SVIKSLTTHV KRQGFSALPQ VCLRAGSALL DLVQARPSIF PISSQELFSI  180
LDDASERTFL CGAAVSMQKY IFDGEAGKIG LETKNLVACT SFLVEQKLVK EWLADKDAEA  240
LRCQKLLVEE EEAAQKRQVE LLERKRQKKL RQKEQKAKEQ RHWELEESKP NMDDLLEVNT  300
LAETSSPSAV DSDGQNPLMS TDQIIPSVEP NLFSKLEENV DYEIQTGFSN GYSDPGISQN  360
IERRTEQVGH RHIVVARRQT PPNSQRGVLN DFHASQNSHG FKCGGINKHG TNRERFAPIG  420
NGNKIWSQKP KAVNEGESLK IRMEKQAANQ LNQNKNHELL IGSISVTLEN YSNHDGNNLA  480
EACDRSLAEC RIPKNNVQEK SSKLDPVQGV TNRSTIKFWR PVSRHESKSS SPVQNGASES  540
EVQVIAEKDG ARTSSNETCL RSCSTDGIDG VVSMDLISTL KESVQPESSQ FDSHTAKAIL  600
AQRWKEALAG EHVTLVLTPN LDPPGCSEIE ADSSEKLVVK ARAFEASTAG PARGKFRRKP  660
EKGAKIKYIP KQRSAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262269ERKRQKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440133.10.0PREDICTED: uncharacterized protein LOC105765523 isoform X1
TrEMBLA0A0D2T8260.0A0A0D2T826_G
STRINGVIT_16s0050g00700.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-153C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]